Totalomics Solutions

TotalOmics

레퍼런스 기반 유전체 해독 관련 논문


2010년

  • Ohm RA. et al., Genome sequence of the model mushroom Schizophyllum commune. Nat Biotechnol. 2010 Sep;28(9):957-63. Epub 2010 Jul 11.
  • Antonacci F. et al., A large and complex structural polymorphism at 16p12.1 underlies microdeletion disease risk. Nat Genet. 2010 Sep;42(9):745-50. Epub 2010 Aug 22.
  • Li M. et al., Detecting heteroplasmy from high-throughput sequencing of complete human mitochondrial DNA genomes. Am J Hum Genet. 2010 Aug 13;87(2):237-49.
  • Linares DM. et al., Evolved Lactococcus lactis strains for enhanced expression of recombinant membrane proteins. J Mol Biol. 2010 Aug 6;401(1):45-55. Epub 2010 Jun 11.
  • van Niftrik L. et al., Intracellular localization of membrane-bound ATPases in the compartmentalized anammox bacterium 'Candidatus Kuenenia stuttgartiensis'. Mol Microbiol. 2010 Aug;77(3):701-15. Epub 2010 Jun 9.
  • Yi X. et al., Sequencing of 50 human exomes reveals adaptation to high altitude. Science. 2010 Jul 2;329(5987):75-8.
  • Neafsey DE. et al., Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control. Genome Res. 2010 Jul;20(7):938-46. Epub 2010 Jun 1.
  • Corvalia AR. et al., A type III-like restriction endonuclease functions as a major barrier to horizontal gene transfer in clinical Staphylococcus aureus strains. Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11954-8. Epub 2010 Jun 14.
  • Schatz MC. et al., Assembly of large genomes using second-generation sequencing. Genome Res. 2010 Sep;20(9):1165-73. Epub 2010 May 27.
  • Casci T. et al., Genomics: Technical feat gives clues to human origins. Nat Rev Genet. 2010 Jun 2;11(7):456-457.
  • Rosenfeld JA. et al., Novel multi-nucleotide polymorphisms in the human genome characterized by whole genome and exome sequencing. Nucleic Acids Res. 2010 Oct 1;38(18):6102-11. Epub 2010 May 20.
  • Atanur SS. et al., The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance. Genome Res. 2010 Jun;20(6):791-803. Epub 2010 Apr 29.
  • Wolinsky H. et al, History in a single hair. EMBO Rep. 2010 Jun;11(6):427-30.
  • Cheng Y. et al., Identification of novel SNPs by next-generation sequencing of the genomic region containing the APC gene in colorectal cancer patients in China. OMICS. 2010 Jun;14(3):315-25.
  • Sobreira NL. et al., Whole-genome sequencing of a single proband together with linkage analysis identifies a Mendelian disease gene. PLoS Genet. 2010 Jun 17;6(6):e1000991.
  • Mohr R. et al., A new chlorophyll d-containing cyanobacterium: evidence for niche adaptation in the genus Acaryochloris. ISME J. 2010 May 27. [Epub ahead of print]
  • Johnston JJ. et al., Massively parallel sequencing of exons on the X chromosome identifies RBM10 as the gene that causes a syndromic form of cleft palate. Am J Hum Genet. 2010 May 14;86(5):743-8. Epub 2010 May 6.
  • Matkovich SJ. et al., Deep mRNA sequencing for in vivo functional analysis of cardiac transcriptional regulators: application to Galphaq. Circ Res. 2010 May 14;106(9):1459-67. Epub 2010 Apr 1.
  • de Vries SP. et al., Genome analysis of Moraxella catarrhalis strain RH4, a human respiratory tract pathogen. J Bacteriol. 2010 Jul;192(14):3574-83. Epub 2010 May 7.
  • Green RE. et al., A draft sequence of the Neandertal genome. Science. 2010 May 7;328(5979):710-22.
  • Quiulan AR. et al., Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome. Genome Res. 2010 May;20(5):623-35. Epub 2010 Mar 22.
  • Slade I. et al., Constitutional translocation breakpoint mapping by genome-wide paired-end sequencing identifies HACE1 as a putative Wilms tumour susceptibility gene. J Med Genet. 2010 May;47(5):342-7. Epub 2009 Nov 30.
  • Baranzini SE. et al., Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis. Nature. 2010 Apr 29;464(7293):1351-6.
  • He M. et al., Evolutionary dynamics of Clostridium difficile over short and long time scales. Proc Natl Acad Sci U S A. 2010 Apr 20;107(16):7527-32. Epub 2010 Apr 5.
  • Chen H. et al., Mitochondrial fusion is required for mtDNA stability in skeletal muscle and tolerance of mtDNA mutations. Cell. 2010 Apr 16;141(2):280-9.
  • Castle JC. et al., DNA copy number, including telomeres and mitochondria, assayed using next-generation sequencing. BMC Genomics. 2010 Apr 16;11:244.
  • Yongfeng H. et al., Direct pathogen detection from swab samples using a new high-throughput sequencing technology. Clin Microbiol Infect. 2010 Apr 15. [Epub ahead of print]
  • Gracheva EO. et al., Molecular basis of infrared detection by snakes. Nature. 2010 Apr 15;464(7291):1006-11. Epub 2010 Mar 14.
  • Ding L. et al. Genome remodelling in a basal-like breast cancer metastasis and xenograft. Nature. 2010 Apr 15;464(7291):999-1005.
  • Martin F. et al., Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis. Nature. 2010 Apr 15;464(7291):1033-8. Epub 2010 Mar 28.
  • Picardi E. et al., Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing. Nucleic Acids Res. 2010 Aug;38(14):4755-67. Epub 2010 Apr 12.
  • Krause J. et al., The complete mitochondrial DNA genome of an unknown hominin from southern Siberia. Nature. 2010 Apr 8;464(7290):894-7. Epub 2010 Mar 24.
  • Berger MF. et al., Integrative analysis of the melanoma transcriptome. Genome Res. 2010 Apr;20(4):413-27. Epub 2010 Feb 23.
  • Warren WC. et al., The genome of a songbird. Nature. 2010 Apr 1;464(7289):757-62.
  • Chen CL. et al., Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes. Genome Res. 2010 Apr;20(4):447-57. Epub 2010 Jan 26.
  • Bellone RR. et al., Fine-mapping and mutation analysis of TRPM1: a candidate gene for leopard complex (LP) spotting and congenital stationary night blindness in horses. Brief Funct Genomics. 2010 May;9(3):193-207. Epub 2010 Mar 29.
  • Ettwig KE. et al., Nitrite-driven anaerobic methane oxidation by oxygenic bacteria. Nature. 2010 Mar 25;464(7288):543-8.
  • Hittinger CT. et al., Remarkably ancient balanced polymorphisms in a multi-locus gene network. Nature. 2010 Mar 4;464(7285):54-8. Epub 2010 Feb 17.
  • Beres SB. et al., Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics. Proc Natl Acad Sci U S A. 2010 Mar 2;107(9):4371-6. Epub 2010 Feb 8.
  • Webb KM. et al., Deep resequencing of Trichinella spiralis reveals previously un-described single nucleotide polymorphisms and intra-isolate variation within the mitochondrial genome. Infect Genet Evol. 2010 Mar;10(2):304-10. Epub 2010 Jan 18.
  • Schuster SC. et al., Complete Khoisan and Bantu genomes from southern Africa. Nature. 2010 Feb 18;463(7283):943-7.
  • Rasmussen M. et al., Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature. 2010 Feb 11;463(7282):757-62.
  • Jiang L. et al., Epigenetic control of the variable expression of a Plasmodium falciparum receptor protein for erythrocyte invasion. Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):2224-9. Epub 2010 Jan 13.
  • Hohenlohe PA. et al., Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags. PLoS Genet. 2010 Feb 26;6(2):e1000862.
  • Salzberg SL. et al., Mind the gaps. Nat Methods. 2010 Feb;7(2):105-6.
  • Young AL. et al., A new strategy for genome assembly using short sequence reads and reduced representation libraries. Genome Res. 2010 Feb;20(2):249-56.
  • Clarke CR. et al., Pseudomonas syringae strains naturally lacking the classical P. syringae hrp/hrc Locus are common leaf colonizers equipped with an atypical type III secretion system. Mol Plant Microbe Interact. 2010 Feb;23(2):198-210.
  • Steward CA. et al., Genome-wide end-sequenced BAC resources for the NOD/MrkTac() and NOD/ShiLtJ() mouse genomes. Genomics. 2010 Feb;95(2):105-10. Epub 2009 Nov 10.
  • Wu Q. et al., Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs. Proc Natl Acad Sci U S A. 2010 Jan 26;107(4):1606-11. Epub 2010 Jan 4.
  • Turner TL. et al., Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils. Nat Genet. 2010 Mar;42(3):260-3. Epub 2010 Jan 24.
  • Harris SR. et al., Evolution of MRSA during hospital transmission and intercontinental spread. Science. 2010 Jan 22;327(5964):469-74.
  • Worley KC. et al., Genetics: Decoding a national treasure. Nature. 2010 Jan 21;463(7279):303-4.
  • Werren JH. et al., Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science. 2010 Jan 15;327(5963):343-8.
  • Pleasance ED. et al., A comprehensive catalogue of somatic mutations from a human cancer genome. Nature. 2010 Jan 14;463(7278):191-6. Epub 2009 Dec 16.
  • Davis RE. et al., Chronic active B-cell-receptor signalling in diffuse large B-cell lymphoma. Nature. 2010 Jan 7;463(7277):88-92.
  • Li R. et al., Building the sequence map of the human pan-genome. Nat Biotechnol. 2010 Jan;28(1):57-63. Epub 2009 Dec 7.
  • Metzker ML. et al., Sequencing technologies - the next generation. Nat Rev Genet. 2010 Jan;11(1):31-46. Epub 2009 Dec 8.
  • Ossowski S. et al., The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana. Science. 2010 Jan 1;327(5961):92-4.
  • Yoder-Himes DR. et al., Identification of potential therapeutic targets for Burkholderia cenocepacia by comparative transcriptomics. PLoS One. 2010 Jan 15;5(1):e8724.
  • Marchetti M. et al., Experimental evolution of a plant pathogen into a legume symbiont. PLoS Biol. 2010 Jan 12;8(1):e1000280.
  • Myles S. et al., Rapid genomic characterization of the genus vitis. PLoS One. 2010 Jan 13;5(1):e8219.
  • Steen JA. et al., Fis is essential for capsule production in Pasteurella multocida and regulates expression of other important virulence factors. PLoS Pathog. 2010 Feb 5;6(2):e1000750.
  • Parameswaran P. et al., Six RNA viruses and forty-one hosts: viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems. PLoS Pathog. 2010 Feb 12;6(2):e1000764.
  • Cazalet C. et al., Analysis of the Legionella longbeachae genome and transcriptome uncovers unique strategies to cause Legionnaires' disease. PLoS Genet. 2010 Feb 19;6(2):e1000851.
  • Edwards CJ. et al., A complete mitochondrial genome sequence from a mesolithic wild aurochs (Bos primigenius). PLoS One. 2010 Feb 17;5(2):e9255.
  • Veitch NJ. et al., Digital gene expression analysis of two life cycle stages of the human-infective parasite, Trypanosoma brucei gambiense reveals differentially expressed clusters of co-regulated genes. BMC Genomics. 2010 Feb 22;11:124.
  • Rose AM. et al., Genomic sequence of a mutant strain of Caenorhabditis elegans with an altered recombination pattern. BMC Genomics. 2010 Feb 23;11:131.
  • Zhang Y. et al., Expression in aneuploid Drosophila S2 cells. PLoS Biol. 2010 Feb 23;8(2):e1000320.
  • Nubel U. et al., A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureus. PLoS Pathog. 2010 Apr 8;6(4):e1000855.
  • Nowrousian M. et al., De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis. PLoS Genet. 2010 Apr 8;6(4):e1000891.
  • Correa RL. et al., MicroRNA-directed siRNA biogenesis in Caenorhabditis elegans. PLoS Genet. 2010 Apr 8;6(4):e1000903.
  • Martinez DA. et al., The next generation becomes the now generation. PLoS Genet. 2010 Apr 8;6(4):e1000906.
  • Dotsch A. et al., Evolutionary conservation of essential and highly expressed genes in Pseudomonas aeruginosa. BMC Genomics. 2010 Apr 9;11:234.
  • Wang E. et al., Duplication and independent selection of cell-wall invertase genes GIF1 and OsCIN1 during rice evolution and domestication. BMC Evol Biol. 2010 Apr 23;10:108.
  • Green S. et al., Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum. PLoS One. 2010 Apr 19;5(4):e10224.
  • Kuroda M. et al., Characterization of quasispecies of pandemic 2009 influenza A virus (A/H1N1/2009) by de novo sequencing using a next-generation DNA sequencer. PLoS One. 2010 Apr 23;5(4):e10256.
  • Woyke T. et al., One bacterial cell, one complete genome. PLoS One. 2010 Apr 23;5(4):e10314.
  • Eckerle LD. et al., Infidelity of SARS-CoV Nsp14-exonuclease mutant virus replication is revealed by complete genome sequencing. PLoS Pathog. 2010 May 6;6(5):e1000896.
  • Bueno R. et al., Second generation sequencing of the mesothelioma tumor genome. PLoS One. 2010 May 13;5(5):e10612.
  • Wenger JW. et al., Bulk segregant analysis by high-throughput sequencing reveals a novel xylose utilization gene from Saccharomyces cerevisiae. PLoS Genet. 2010 May 13;6(5):e1000942.
  • Vlad D. et al., Gene transposition causing natural variation for growth in Arabidopsis thaliana. PLoS Genet. 2010 May 13;6(5):e1000945.
  • Cordey S. et al., Rhinovirus genome evolution during experimental human infection. PLoS One. 2010 May 11;5(5):e10588.
  • Beaume M. et al., Cartography of methicillin-resistant S. aureus transcripts: detection, orientation and temporal expression during growth phase and stress conditions. PLoS One. 2010 May 20;5(5):e10725.
  • Han TX. et al., Global fitness profiling of fission yeast deletion strains by barcode sequencing. Genome Biol. 2010;11(6):R60. Epub 2010 Jun 10.
  • Gao W. et al., Two novel point mutations in clinical Staphylococcus aureus reduce linezolid susceptibility and switch on the stringent response to promote persistent infection. PLoS Pathog. 2010 Jun 10;6(6):e1000944.
  • Nagarajan H. et al., De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads. PLoS One. 2010 Jun 8;5(6):e10922.


2009년

  • Stephens PJ. et al., Complex landscapes of somatic rearrangement in human breast cancer genomes. Nature. 2009 Dec 24;462(7276):1005-10.
  • Wu D. et al., A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature. 2009 Dec 24;462(7276):1056-60.
  • Parkhomchuk D. et al., Use of high throughput sequencing to observe genome dynamics at a single cell level. Proc Natl Acad Sci U S A. 2009 Dec 8;106(49):20830-5. Epub 2009 Nov 23.
  • Lowder BV. et al., Recent human-to-poultry host jump, adaptation, and pandemic spread of Staphylococcus aureus. Proc Natl Acad Sci U S A. 2009 Nov 17;106(46):19545-50. Epub 2009 Nov 2.
  • Dutilh BE. et al., Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly. Bioinformatics. 2009 Nov 1;25(21):2878-81. Epub 2009 Jun 19.
  • Quon G. et al., ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencing. Bioinformatics. 2009 Nov 1;25(21):2882-9. Epub 2009 Jun 19.
  • Vasta V. et al., Next generation sequence analysis for mitochondrial disorders. Genome Med. 2009 Oct 23;1(10):100.
  • Barrick JE. et al., Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature. 2009 Oct 29;461(7268):1243-7. Epub 2009 Oct 18.
  • Sudbery I. et al., Deep short-read sequencing of chromosome 17 from the mouse strains A/J and CAST/Ei identifies significant germline variation and candidate genes that regulate liver triglyceride levels. Genome Biol. 2009;10(10):R112. Epub 2009 Oct 13.
  • Shah SP. et al., Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution. Nature. 2009 Oct 8;461(7265):809-13.
  • Corradi N. et al., Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions. Genome Biol. 2009;10(10):R106. Epub 2009 Oct 6.
  • Tinline-Purvis H. et al., Failed gene conversion leads to extensive end processing and chromosomal rearrangements in fission yeast. EMBO J. 2009 Nov 4;28(21):3400-12. Epub 2009 Oct 1.
  • Bradley AJ. et al., High-throughput sequence analysis of variants of human cytomegalovirus strains Towne and AD169. J Gen Virol. 2009 Oct;90(Pt 10):2375-80. Epub 2009 Jun 24.
  • Stabler RA. et al., Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium. Genome Biol. 2009;10(9):R102. Epub 2009 Sep 25.
  • Le Crom S. et al., Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing. Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16151-6. Epub 2009 Sep 2.
  • Denver DR. et al., A genome-wide view of Caenorhabditis elegans base-substitution mutation processes. Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16310-4. Epub 2009 Sep 10.
  • Schneeberger K. et al., Simultaneous alignment of short reads against multiple genomes. Genome Biol. 2009;10(9):R98. Epub 2009 Sep 17.
  • Diguistini S. et al., De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data. Genome Biol. 2009;10(9):R94. Epub 2009 Sep 11.
  • Ng SB. et al., Targeted capture and massively parallel sequencing of 12 human exomes. Nature. 2009 Sep 10;461(7261):272-6. Epub 2009 Aug 16.
  • Varshney RK. et al., Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends Biotechnol. 2009 Sep;27(9):522-30. Epub 2009 Aug 11.
  • Croucher NJ. et al., From small reads do mighty genomes grow. Nat Rev Microbiol. 2009 Sep;7(9):621.
  • Chen K. et al., BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nat Methods. 2009 Sep;6(9):677-81. Epub 2009 Aug 9.
  • Chun J. et al., Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae. Proc Natl Acad Sci U S A. 2009 Sep 8;106(36):15442-7. Epub 2009 Aug 31.
  • Alkan C. et al., Personalized copy number and segmental duplication maps using next-generation sequencing. Nat Genet. 2009 Oct;41(10):1061-7. Epub 2009 Aug 30.
  • Xia Q. et al., Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx). Science. 2009 Oct 16;326(5951):433-6. Epub 2009 Aug 27.
  • Studholme DJ. et al., A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528. BMC Genomics. 2009 Aug 24;10:395.
  • McCutcheon JP. et al., Convergent evolution of metabolic roles in bacterial co-symbionts of insects. Proc Natl Acad Sci U S A. 2009 Sep 8;106(36):15394-9. Epub 2009 Aug 24.
  • Suchland RJ. et al., Horizontal transfer of tetracycline resistance among Chlamydia spp. in vitro. Antimicrob Agents Chemother. 2009 Nov;53(11):4604-11. Epub 2009 Aug 17.
  • Li H. et al., The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009 Aug 15;25(16):2078-9. Epub 2009 Jun 8.
  • Yoon S. et al., Sensitive and accurate detection of copy number variants using read depth of coverage. Genome Res. 2009 Sep;19(9):1586-92. Epub 2009 Aug 5.
  • Tucker T. et al., Massively parallel sequencing: the next big thing in genetic medicine. Am J Hum Genet. 2009 Aug;85(2):142-54.
  • Azuma Y. et al., Whole-genome analyses reveal genetic instability of Acetobacter pasteurianus. Nucleic Acids Res. 2009 Sep;37(17):5768-83. Epub 2009 Jul 28.
  • Davis BM. et al., High-throughput sequencing reveals suppressors of Vibrio cholerae rpoE mutations: one fewer porin is enough. Nucleic Acids Res. 2009 Sep;37(17):5757-67. Epub 2009 Jul 20.
  • Gehring M. et al., Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science. 2009 Jun 12;324(5933):1447-51.
  • Huang X. et al., High-throughput genotyping by whole-genome resequencing. Genome Res. 2009 Jun;19(6):1068-76. Epub 2009 May 6.
  • Ahn SM. et al., The first Korean genome sequence and analysis: full genome sequencing for a socio-ethnic group. Genome Res. 2009 Sep;19(9):1622-9. Epub 2009 May 26.
  • Hormozdiari F. et al., Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes. Genome Res. 2009 Jul;19(7):1270-8. Epub 2009 May 15.
  • Brkanac Z. et al., IFRD1 is a candidate gene for SMNA on chromosome 7q22-q23. Am J Hum Genet. 2009 May;84(5):692-7. Epub 2009 Apr 30.
  • Liti G. et al., Population genomics of domestic and wild yeasts. Nature. 2009 Mar 19;458(7236):337-41. Epub 2009 Feb 11.
  • Kozarewa I. et al., Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes. Nat Methods. 2009 Apr;6(4):291-5. Epub 2009 Mar 15.
  • Uziel T. et al., The miR-17~92 cluster collaborates with the Sonic Hedgehog pathway in medulloblastoma. Proc Natl Acad Sci U S A. 2009 Feb 24;106(8):2812-7. Epub 2009 Feb 5.
  • Pennisi E. et al., Neandertal genomics. Tales of a prehistoric human genome. Science. 2009 Feb 13;323(5916):866-71.
  • Farrer RA. et al., De novo assembly of the Pseudomonas syringae pv. syringae B728a genome using Illumina/Solexa short sequence reads. FEMS Microbiol Lett. 2009 Feb;291(1):103-11. Epub 2008 Dec 9.
  • Reinhardt JA. et al., De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae. Genome Res. 2009 Feb;19(2):294-305. Epub 2008 Nov 17.
  • Nusbaum C. et al., Sensitive, specific polymorphism discovery in bacteria using massively parallel sequencing. Nat Methods. 2009 Jan;6(1):67-9. Epub 2008 Dec 14.
  • Almeida NF. et al., A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000. Mol Plant Microbe Interact. 2009 Jan;22(1):52-62.
  • Schweiger MR. et al., Genome-wide massively parallel sequencing of formaldehyde fixed-paraffin embedded (FFPE) tumor tissues for copy-number- and mutation-analysis. PLoS One. 2009;4(5):e5548. Epub 2009 May 14.
  • Ramos AM. et al., Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology. PLoS One. 2009 Aug 5;4(8):e6524.
  • Eck SH. et al., Whole genome sequencing of a single Bos taurus animal for single nucleotide polymorphism discovery. Genome Biol. 2009;10(8):R82. Epub 2009 Aug 6.
  • Rodrigue S. et al., Whole genome amplification and de novo assembly of single bacterial cells. PLoS One. 2009 Sep 2;4(9):e6864.
  • Niemann S. et al., Genomic diversity among drug sensitive and multidrug resistant isolates of Mycobacterium tuberculosis with identical DNA fingerprints. PLoS One. 2009 Oct 12;4(10):e7407.
  • Conrad TM. et al., Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations. Genome Biol. 2009;10(10):R118. Epub 2009 Oct 22.
  • Qi J. et al., Characterization of meiotic crossovers and gene conversion by whole-genome sequencing in Saccharomyces cerevisiae. BMC Genomics. 2009 Oct 15;10:475.
  • Kerstens HH. et al., Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey. BMC Genomics. 2009 Oct 16;10:479.
  • Tewhey R. et al., Enrichment of sequencing targets from the human genome by solution hybridization. Genome Biol. 2009;10(10):R116. Epub 2009 Oct 16.
  • Trick M. et al., Complexity of genome evolution by segmental rearrangement in Brassica rapa revealed by sequence-level analysis. BMC Genomics. 2009 Nov 18;10:539.
  • Greub G. et al., High throughput sequencing and proteomics to identify immunogenic proteins of a new pathogen: the dirty genome approach. PLoS One. 2009 Dec 23;4(12):e8423.
  • Oliver HF. et al., Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs. BMC Genomics. 2009 Dec 30;10:641.
  • Pillai DR. et al., Genome-wide dissection of globally emergent multi-drug resistant serotype 19A Streptococcus pneumoniae. BMC Genomics. 2009 Dec 30;10:642.
  • Dickins B. et al., High-resolution mapping of evolutionary trajectories in a phage. Genome Biol Evol. 2009 Aug 11;1:294-307.
  • Chiang DY. et al., High-resolution mapping of copy-number alterations with massively parallel sequencing. Nat Methods. 2009 Jan;6(1):99-103. Epub 2008 Nov 30.


2008년

  • Chiu RW. et al., Noninvasive prenatal diagnosis of fetal chromosomal aneuploidy by massively parallel genomic sequencing of DNA in maternal plasma. Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20458-63. Epub 2008 Dec 10.
  • Aury JM. et al., High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies. BMC Genomics. 2008 Dec 16;9:603.
  • International Silkworm Genome Consortium. The genome of a lepidopteran model insect, the silkworm Bombyx mori. Insect Biochem Mol Biol. 2008 Dec;38(12):1036-45. Epub 2008 Dec 16.
  • Bentley DR. et al., Accurate whole human genome sequencing using reversible terminator chemistry. Nature. 2008 Nov 6;456(7218):53-9.
  • Wang J. et al., The diploid genome sequence of an Asian individual. Nature. 2008 Nov 6;456(7218):60-5.
  • Ley TJ. et al., DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome. Nature. 2008 Nov 6;456(7218):66-72.
  • Hayton K. et al., Drug resistance and genetic mapping in Plasmodium falciparum. Curr Genet. 2008 Nov;54(5):223-39. Epub 2008 Sep 18.
  • Ossowski S. et al., Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Res. 2008 Dec;18(12):2024-33. Epub 2008 Sep 25.
  • Robertson AG. et al., Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding. Genome Res. 2008 Dec;18(12):1906-17. Epub 2008 Sep 11.
  • Cronn R. et al., Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Nucleic Acids Res. 2008 Nov;36(19):e122. Epub 2008 Aug 27.
  • Sarin S. et al., Caenorhabditis elegans mutant allele identification by whole-genome sequencing. Nat Methods. 2008 Oct;5(10):865-7. Epub 2008 Aug 1.
  • Kistler AL. et al., Recovery of divergent avian bornaviruses from cases of proventricular dilatation disease: identification of a candidate etiologic agent. Virol J. 2008 Jul 31;5:88.
  • Batista PJ. et al., PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans. Mol Cell. 2008 Jul 11;31(1):67-78. Epub 2008 Jun 19.
  • Holt RA. et al., The new paradigm of flow cell sequencing. Genome Res. 2008 Jun;18(6):839-46.
  • Nagalakshmi U. et al., The transcriptional landscape of the yeast genome defined by RNA sequencing.Science. 2008 Jun 6;320(5881):1344-9. Epub 2008 May 1.
  • Blow MJ. et al., Identification of ancient remains through genomic sequencing. Genome Res. 2008 Aug;18(8):1347-53. Epub 2008 Apr 21.
  • Margulies EH. et al., Approaches to comparative sequence analysis: towards a functional view of vertebrate genomes. Nat Rev Genet. 2008 Apr;9(4):303-13.
  • Bashir A. et al., Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer. PLoS Comput Biol. 2008 Apr 25;4(4):e1000051.
  • Chen W. et al., Mapping translocation breakpoints by next-generation sequencing. Genome Res. 2008 Jul;18(7):1143-9. Epub 2008 Mar 7.
  • Hillier LW. et al., Whole-genome sequencing and variant discovery in C. elegans. Nat Methods. 2008 Feb;5(2):183-8. Epub 2008 Jan 20.
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